dataeducation/moderndive_book

Statistical Inference via Data Science: A moderndive into R and the tidyverse

dataeducation/shinystats

An interactive web application for teaching medical statistics.

histopathology/SteroidogenicGenes

Steroidogenic genes in normal tissue vs Cancer

histopathology/imagej-intro

Analyzing fluorescence microscopy images with ImageJ

histopathology/qupath

QuPath - Open Source Digital Pathology

histopathology/ukbrest

ukbREST: efficient and streamlined data access for reproducible research of large biobanks

sbalci/2018

Fall 2018 repository with course materials for JHU Advanced Data Science

sbalci/AutoJournalWatch

A trial to automate my Journal Watch efforts

sbalci/AutomatedCV

sbalci/BU-dataviz-workshop-2019

Installation instructions and needed files for students at the intro to data visualization in R Data + Narrative session June 6

sbalci/Bar-Chart-Race

Function to make bar chart race in R

sbalci/BibliographicStudies

Bibliographic Studies

sbalci/BioRxivCurator

Batch scripts curating BioRxiv and PubMed articles by using Altmetric score.

sbalci/Breast-Cancer-Deep-Learning

initial commit

sbalci/BreastCancer_Classification

Machine learning classifier for cancer tissues

sbalci/Data-Preparation-for-Histopathology-Research

Course Files For Data Preparation for Histopathology Research

sbalci/DataScienceSpecialization.github.io

http://DataScienceSpecialization.github.io

sbalci/DeutschLernen

sbalci/Doing-Meta-Analysis-in-R

All R codes for the guide "Doing Meta-Analysis in R"

sbalci/EDirectCookbook

sbalci/GDC

sbalci/Headstart

A framework for creating web-based knowledge maps

sbalci/IPA4LSx

ImageJ Macro Scripts showcased during Image Processing and Analysis for Life Scientists MOOC on EdX

sbalci/Installations_Mac_Ubuntu_Windows

Installations for Data Science. Anaconda, RStudio, Spark, TensorFlow, AWS (Amazon Web Services).

sbalci/IntroToR

Materials for 2018 rstudio::conf shortcourse, Introduction to R & RStudio

sbalci/JournalWatchPBPath

Journal Watch for PBPath.org

sbalci/JournalWatchTurkishPathology

sbalci/JuliaCourseNotebooks

Jupyter notebooks for the Julia Scientific Programming course on Coursera

sbalci/Kotu-Veri-Kilavuzu

"The Quartz guide to bad data"nın Türkçe çevirisi: Kötü Veri Kılavuzu

sbalci/MeSHSim

R package for calculating MeSH(Medline Subject Headings) similarity

sbalci/MyJournalWatch

My Journal Watch contains articles that I think worth reading

sbalci/MyRCodesForDataAnalysis

My R Codes For Data Analysis

sbalci/NGS-Tutorial

NGS Tutorial

sbalci/Neurohacking

Neurohacking Coursera Course

sbalci/Neurohacking_data

Data for Neurohacking MOOC

sbalci/ParaPathology

My Notes related to Pathology and ParaPathology

sbalci/Python_for_Medical_Statistics

YouTube course using IPython and Jupyter notebooks to do statistical analysis.

sbalci/R-graph-gallery

A website that displays hundreds of R charts

sbalci/RISmed

RISmed is an R package for downloading and analyzing data from the NCBI databases

sbalci/RPackage

Materials for writing an R Package

sbalci/RStudioConf2017Slides

Links to slides for talks at the 2017 rstudio::conf

sbalci/R_snippets

R Scripts for general data analysis and plotting

sbalci/ReproducibilityCancerResearch

sbalci/SAScii

Import ASCII files directly into R using only a SAS input script

sbalci/SDSS2019

Materials for SDSS 2019, Bellevue WA

sbalci/SEER

sbalci/SEER_read_fwf

Reading SEER ASCII files with R

sbalci/SPSStoR

R package to convert SPSS syntax to R code

sbalci/ShinyPubMed

sbalci/TurkPathScholar

Articles of Pathology and Profiles of Pathologists from Turkey in Google Scholar

sbalci/Twitter

Code to analyse interesting Twitter data (e.g. conference coverage)

sbalci/WoS-using-R

Web of Science access using R

sbalci/asdfree

analyze survey data for free

sbalci/bad-data-guide

An exhaustive reference to problems seen in real-world data along with suggestions on how to resolve them.

sbalci/bioinformatics

sbalci/biostat561

Course materials for BIOST561

sbalci/biostatmethods

Data and Code for Methods in Biostatistics in R

sbalci/bookdown-pathology

sbalci/citation-network

Create a quick cross-citation network for a set of texts using R

sbalci/citation_map

Create a Gephi Citation Graph based on Simplistic Text Analysis of PDFs

sbalci/collaborationNetworkIllustration

Creating Interactive visualisations of collaboration networks with JavaScript

sbalci/corr_meta

Supplementary script for meta-analysis primer

sbalci/country-list

:globe_with_meridians: List of all countries with names and ISO 3166-1 codes in all languages and data formats.

sbalci/countrycode

R package: Convert country names and country codes. Assigns region descriptors.

sbalci/courses

Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1

sbalci/data_to_viz

Leading to the dataviz you need

sbalci/datacamp_facebook_live_intro_to_tidyverse

DataCamp Facebook Live Code Along Session 5: Learn how to to use tidy tools in R, such as dplyr and ggplot2, to intuitively explore & analyze your data.

sbalci/datasci

chunks of code from my Data Science Projects...

sbalci/dataviz

A book covering the fundamentals of data visualization.

sbalci/eutilitiesR

sbalci/first-contributions

Helping you make your first pull request!

sbalci/flow_circos

Basic functionality to create circos plot that shows concurrent positivity of flow cytometry markers.

sbalci/free_cite

web app for parsing citations

sbalci/g2r

📈Grammar of graphics for interactive visualisations

sbalci/galaxy

Data intensive biology for everyone.

sbalci/h2o-tutorials

Tutorials and training material for the H2O Machine Learning Platform

sbalci/handson-ml

A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in python using Scikit-Learn and TensorFlow.

sbalci/healthyr_book

R for healthcare data analysis

sbalci/healthyr_markdown_materials

sbalci/healthyr_notebooks_materials

sbalci/histopathR

The codes I use in histopathology research

sbalci/hopr

This is the website for "Hands-On Programming with R," a book that teaches how to program in R, with hands-on examples.

sbalci/images

sbalci/jsmodule

RStudio Addins and Shiny Modules for Medical Research

sbalci/labs

Rmd source files for the HarvardX series PH525x

sbalci/lodown

locally download and prepare publicly-available microdata

sbalci/manim

Animation engine for explanatory math videos

sbalci/modules

sbalci/myc_brca_study

sbalci/open_projects

A repository for sharing code and my various projects

sbalci/opendata

CRAN OpenData Task View

sbalci/orly-full-res

Full resolution images of the O RLY book covers made by The Practical Dev

sbalci/pathology

Pathology Related

sbalci/practice_assignment

Practice assignment for the R programming class on Coursera

sbalci/primer

code that makes videos for this: youtube.com/c/primerlearning

sbalci/primerPowerIRSP

Supporting material for "Perugini, Gallucci, Costantini (2018). A practical primer to power analysis for simple experimental designs. IRSP"

sbalci/psycho.R

Efficient and Publishing-Oriented Workflow for Psychological Science

sbalci/pubmed

PubMed

sbalci/pubmed_xml_to_csv

Pull all authors of a paper on pubmed, convert to Excel/CSV

sbalci/r-pkgs

Building R packages

sbalci/rAltmetric

Query and visualize metrics from altmetric.com

sbalci/raincloud-shiny

Shiny app for customizing Raincloud plots

sbalci/rbasics-book

An introduction to R, RStudio, and RMarkdown created with GitHub pages and bookdown package

sbalci/rest-api-doc

Documentation for Crossref's REST API

sbalci/rorcid

A programmatic interface the Orcid.org API

sbalci/rpubmed

Tools for extracting and processing Pubmed and Pubmed Central records.

sbalci/rsconf_tweets

rstudio::conf 2018 tweet explorer and FOMO reducer

sbalci/rstudio-conf

Materials for rstudio::conf

sbalci/rstudioconf_tweets

🖥 A repository for tracking tweets about rstudio::conf

sbalci/rvest

Simple web scraping for R

sbalci/sbalci.github.io

This page contains information and links about Serdar Balci MD Pathologist

sbalci/scholar

Analyse citation data from Google Scholar

sbalci/scholar.py

A parser for Google Scholar, written in Python

sbalci/scholar.shiny

A shiny application that interacts with Google Scholar

sbalci/serdarbalci

My Hugo Academic web site

sbalci/shiny

Easy interactive web applications with R

sbalci/shiny-examples

sbalci/shiny-music-player

Web-app to collate a music library from multiple streaming services

sbalci/shiny-server

My personal Shiny server

sbalci/shinyfit

Fully-featured multivariable regression on your browser via Shiny

sbalci/stats337

Readings in applied data science

sbalci/stop-predatory-journals.github.io

A listing of predatory academic journals and publishers.

sbalci/survis

Visual Literature Database

sbalci/tableone

R package to create "Table 1", description of baseline characteristics

sbalci/the-art-of-command-line

Master the command line, in one page

sbalci/tidy-animated-verbs

Animations of tidyverse verbs using R, the tidyverse, and gganimate

sbalci/tidy-ds-workshop

Source code and materials for the "Using R and the tidyverse for Data Science" workshop

sbalci/tidytuesday

Official repo for the #tidytuesday project

sbalci/tttable

Defining a grammar of tables

sbalci/tutorials

A repository for tutorials I have linked to my website

sbalci/twitter-blogdown

Fetch Twitter messages weekly and turn them into a website based on blogdown

sbalci/webinars

Code and slides for RStudio webinars

sbalci/workflow

sbalci/xplorerr

Shiny apps for interactive data analysis, visualization and modeling.