wurmlab/
Intuitive local web frontend for the BLAST bioinformatics tool
USD raised
Recent activities
Issue with blast search
Stop referring to google group
Add user interface element for taxonomic search filtering
BLAST failed abruptly (exit status: 137). Killed
BLAST Database error: Error pre-fetching sequence data
circos view breaking
Pairwise alignments are misformatted in PDF output
CSRF blocked the API request
Capitalisation and punctuation in report
BLAST Submission form formatting improvements
Support optional job timeout
Add sam output format? For those funny cases where opening in genome browser may be best?
"Error Obtaining Databases" on sequenceserver launch
Change text download label from "Pairwise" to "Text"
Advanced params help modal should be bigger - take up more of the page so we don't need to scroll as much
Simplify dropbox/url upload & reduce security risk
Make it easier to have custom title and text on page
display issue in Safari 16.5.2 but not Chrome
Tooltip positioning broken
RSpec testing wants to be robust to capybara flakiness
gh actions want js test to run automatically
xml import is unclear
Results summary
Improve coverage for recurring UI issues
Add R API & usage example
sharing email text
Selection issues
Previous query / next query
Word cloud of hit names?
Donwload fasta file - downloads the entire chromosome
database_widget: tree breaks edit / back button
js version bumps
Results page adaptive view breaking
Please update the document for nginx reverse proxy
When more than 8? queries, should show a "next query" button
Container does not to work
SequenceServer tries to format impossible FASTA files
Sticky job_id prevents server from fetching databases
large query doesn't respect UI boundaries
Add "share" link on the left under downloads
FASTA file detection is unreliable
Mechanism to alert users to regarding version or security updates
"select all" gets stuck to state if "Nucleotide databases" are manually selected first and the "select all" is subsequently used.
Accessibility
Rework database compatibility detection
routes.rb posts to /#{job.id}; should post to REQUEST_URI/{#job.id}
Downloads of HSP alignments - slight reformatting
Fold database list when there are many
Support filename with spaces
Multi-column view if only one database type
limit query size and customize /tmp dir
Non-executable files set with executable permissions
Maybe remove '*' if it is at the end of protein sequence
bed or gff alternate table format outputs
Mixed sequence type notification should be sticky
Internet Explorer can only handle a maximum of 4096 selectors in one file
Circos ribbons can be almost invisible for protein query against large genomic contigs/scaffolds
Improve IP/hostname detection on EC2
Allow multiple database directories to be specified
setup script should elegantly handle incorrect database dir
Smarter -d option
Disable FASTA and FASTA of all hits
HTML code in fasta description
Add additional limitations for long query sequence
Make it possible to download xxx bp up+downstream of matched region.
Kablammo hover-on-raise issue.
Alignment overview improvement.
Website: add stuff
FEATURE: keyboard shortcuts !!!
Add DIAMOND/BWA support
Galaxy integration
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