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When finding a broken reference, offer option to remove the reference #1189
bjorn posted onGitHub
A possible resolution when a map refers to a no longer available file would be to remove the reference to that file (including any assets or tiles on the map relying on this reference).
Tiled could provide this action as an option in the broken references view (that pops up when opening a map with broken references).
Suggested at http://forum.mapeditor.org/t/art-study-castlevania-legends/1070